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Changes for tickets -
Allow
--reference-file
to use compressed BGZIP files#347 (https://app.zenhub.com/workspaces/rdpc-development-board-602ed61a0e9a6a001d08c2a0/issues/gh/icgc-argo/workflow-roadmap/347)Updates to address BUG - cannot download ICGC data in AWS EC2 instance #229#346 (https://app.zenhub.com/workspaces/rdpc-development-board-602ed61a0e9a6a001d08c2a0/issues/gh/icgc-argo/workflow-roadmap/346)